Transcriptomics profiling of human PSC cultured under different conditions

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  Description of data files
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*.idat: Raw signal from Illumina HumanHT-12 v4 Expression BeadChip microarrays
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These files contain the raw data obtained from the microarray experiment are in IDAT format.
These can be processed using the illuminaio Bioconductor package in R
(https://www.bioconductor.org/packages/release/bioc/html/illuminaio.html). In our study,
IDAT files were processed and analyzed with the miodin package (https://gitlab.com/algoromics/miodin),
which relies on illuminaio.

Sample table.csv: Table with sample annotations
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The sample table contains the following annotations for the samples in the study:
 * PublicationName: Sample name used in publication
 * CultureCondition: Condition under which cells were cultured, either gelatin, feeder, laminin or transfer
 * DataFile: Name of the IDAT data file for the sample
 * Gender: Indicates gender of donors, M (male) or F (female)
 * Exclude: Samples marked with EXCLUDE were removed prior to analysis

Normalized expression matrix.csv: Matrix with normalized gene expression values
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Contains the gene expression data following processing and normalization of IDAT files with the
miodin package. Columns correspond to the publication name of samples and rows to genes or
Illumina microarray probes.
