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     MODEL SELECTION: RANDOM EFFECTS           
-----------------------------------------------
  Response      CandidateSet  mod                                                                                                                                                                                                                                           Fixed            Random varFunc df     AICc Delta_AICc     weights
1  Biomass 1: random effects mod1 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | DistrictZone    <NA> 12 909.0119   2.419935 0.228410474
2  Biomass 1: random effects mod2 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc     ~1 | Transect    <NA> 12 906.5919   0.000000 0.765946253
3  Biomass 1: random effects mod3 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc              <NA>    <NA> 11 916.4132   9.821296 0.005643273
MODEL SELECTED = mod2

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     MODEL SELECTION: VARIANCE STRUCTURE       
-----------------------------------------------
  Response           CandidateSet   mod                                                                                                                                                                                                                                           Fixed        Random                            varFunc df      AICc Delta_AICc       weights
4  Biomass 2: Variance structures  mod2 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect                               <NA> 12  906.5919  62.108379  3.233741e-14
5  Biomass 2: Variance structures mod10 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect        varPower(form = ~fitted(.)) 13  870.2138  25.730210  2.565218e-06
6  Biomass 2: Variance structures mod11 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect                 varFixed(~initial) 12 1308.8101 464.326507 1.476211e-101
7  Biomass 2: Variance structures mod12 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 16  844.4835   0.000000  9.916727e-01
8  Biomass 2: Variance structures mod13 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect     varIdent(form = ~1 | Transect) 16  854.0760   9.592443  8.192109e-03
9  Biomass 2: Variance structures  mod9 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect          varExp(form = ~fitted(.)) 13  862.3233  17.839777  1.325898e-04
MODEL SELECTED = mod12

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     MODEL SELECTION: FIXED STRUCTURE          
-----------------------------------------------
   Response     CandidateSet                                            mod                                                                                                                                                                                                                                           Fixed        Random                            varFunc df     AICc Delta_AICc      weights
10  Biomass 3: Fixed effects                                           mod1 response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:Manipulation + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:initial.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 16 800.1361  7.1241892 4.655195e-03
11  Biomass 3: Fixed effects                           mod1.ManipxInit_Excl                                                     response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 15 798.4665  5.4545885 1.072722e-02
12  Biomass 3: Fixed effects                 mod1.ManipxInit_Excl.Init_Excl                                                                  response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:Habitat2 + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 14 796.7791  3.7671891 2.494027e-02
13  Biomass 3: Fixed effects                                           mod2                                                                   response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Manipulation:initial.sc + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 15 797.8936  4.8816925 1.428532e-02
14  Biomass 3: Fixed effects                           mod2.ManipxDens_Excl                                                                                                  response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Manipulation:initial.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 14 801.1130  8.1011422 2.856243e-03
15  Biomass 3: Fixed effects                           mod2.ManipxInit_Excl                                                                                             response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 14 796.2557  3.2438430 3.239995e-02
16  Biomass 3: Fixed effects                 mod2.ManipxInit_Excl.Init_Excl                                                                                                          response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:Habitat2 + Habitat2:ReinDensMean.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 794.6198  1.6078936 7.341524e-02
17  Biomass 3: Fixed effects mod2.ManipxInit_Excl.Init_Excl.ManipxDens_Excl                                                                                                                                         response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:Habitat2 + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 797.9469  4.9349691 1.390980e-02
18  Biomass 3: Fixed effects           mod2.ManipxInit_Excl.ManipxDens_Excl                                                                                                                            response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 799.1890  6.1771282 7.474627e-03
19  Biomass 3: Fixed effects                                           mod3                                                                                              response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Manipulation:initial.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 14 797.3126  4.3006709 1.910104e-02
20  Biomass 3: Fixed effects                           mod3.ManipxDens_Excl                                                                                                                             response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Manipulation:initial.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 800.1952  7.1833190 4.519579e-03
21  Biomass 3: Fixed effects                           mod3.ManipxInit_Excl                                                                                                                        response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 795.7709  2.7589638 4.128901e-02
22  Biomass 3: Fixed effects                 mod3.ManipxInit_Excl.Init_Excl                                                                                                                                     response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:Habitat2 + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 794.1310  1.1191327 9.373878e-02
23  Biomass 3: Fixed effects mod3.ManipxInit_Excl.Init_Excl.ManipxDens_Excl                                                                                                                                                                    response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:Habitat2 ~1 | Transect varIdent(form = ~1 | DistrictZone) 11 797.0795  4.0676461 2.146139e-02
24  Biomass 3: Fixed effects           mod3.ManipxInit_Excl.ManipxDens_Excl                                                                                                                                                       response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:Habitat2 ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 798.3326  5.3207136 1.146985e-02
25  Biomass 3: Fixed effects                                           mod4                                                                                                                      response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:initial.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 796.1307  3.1188496 3.448945e-02
26  Biomass 3: Fixed effects                           mod4.ManipxDens_Excl                                                                                                                                                     response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:initial.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 799.9754  6.9635378 5.044555e-03
27  Biomass 3: Fixed effects                           mod4.ManipxInit_Excl                                                                                                                                                response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 794.5905  1.5786127 7.449798e-02
28  Biomass 3: Fixed effects                 mod4.ManipxInit_Excl.Init_Excl                                                                                                                                                             response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 11 793.0119  0.0000000 1.640348e-01
29  Biomass 3: Fixed effects mod4.ManipxInit_Excl.Init_Excl.ManipxDens_Excl                                                                                                                                                                                            response ~ Manipulation + Habitat2 + ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 10 796.9704  3.9585213 2.266491e-02
30  Biomass 3: Fixed effects           mod4.ManipxInit_Excl.ManipxDens_Excl                                                                                                                                                                               response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 11 798.0757  5.0638515 1.304171e-02
31  Biomass 3: Fixed effects                                           mod5                                                                                           response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:initial.sc + Manipulation:ReinDensMean.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 14 796.7368  3.7249507 2.547259e-02
32  Biomass 3: Fixed effects                           mod5.ManipxDens_Excl                                                                                                                          response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:initial.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 800.9238  7.9119358 3.139647e-03
33  Biomass 3: Fixed effects                           mod5.ManipxInit_Excl                                                                                                                     response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:ReinDensMean.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 795.1193  2.1073731 5.719073e-02
34  Biomass 3: Fixed effects                 mod5.ManipxInit_Excl.Init_Excl                                                                                                                                  response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:ReinDensMean.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 793.5444  0.5325166 1.256902e-01
35  Biomass 3: Fixed effects mod5.ManipxInit_Excl.Init_Excl.ManipxDens_Excl                                                                                                                                                                 response ~ Manipulation + Habitat2 + ReinDensMean.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 11 797.8748  4.8629078 1.442012e-02
36  Biomass 3: Fixed effects           mod5.ManipxInit_Excl.ManipxDens_Excl                                                                                                                                                    response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 798.9838  5.9719160 8.282297e-03
37  Biomass 3: Fixed effects                                           mod6                                                   response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:initial.sc + Manipulation:ReinDensMean.sc + Habitat2:ReinDensMean.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 15 798.8532  5.8413243 8.841143e-03
38  Biomass 3: Fixed effects                           mod6.ManipxInit_Excl                                                                             response ~ Manipulation + Habitat2 + ReinDensMean.sc + initial.sc + Manipulation:ReinDensMean.sc + Habitat2:ReinDensMean.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 14 797.1852  4.1732776 2.035730e-02
39  Biomass 3: Fixed effects                 mod6.ManipxInit_Excl.Init_Excl                                                                                          response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:ReinDensMean.sc + Habitat2:ReinDensMean.sc + Manipulation:Habitat2:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 13 795.5293  2.5174231 4.658911e-02
40  Biomass 3: Fixed effects                                           mod7                                                                                                                                 response ~ Manipulation + ReinDensMean.sc + initial.sc + Manipulation:initial.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 12 849.5498 56.5378700 8.667491e-14
41  Biomass 3: Fixed effects                           mod7.ManipxDens_Excl                                                                                                                                                                response ~ Manipulation + ReinDensMean.sc + initial.sc + Manipulation:initial.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 11 854.0933 61.0813947 8.938807e-15
42  Biomass 3: Fixed effects                           mod7.ManipxInit_Excl                                                                                                                                                           response ~ Manipulation + ReinDensMean.sc + initial.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 11 848.2031 55.1911833 1.699506e-13
43  Biomass 3: Fixed effects                 mod7.ManipxInit_Excl.Init_Excl                                                                                                                                                                        response ~ Manipulation + ReinDensMean.sc + Manipulation:ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 10 846.9271 53.9152243 3.216575e-13
44  Biomass 3: Fixed effects mod7.ManipxInit_Excl.Init_Excl.ManipxDens_Excl                                                                                                                                                                                                       response ~ Manipulation + ReinDensMean.sc ~1 | Transect varIdent(form = ~1 | DistrictZone)  9 851.6333 58.6214315 3.058115e-14
45  Biomass 3: Fixed effects           mod7.ManipxInit_Excl.ManipxDens_Excl                                                                                                                                                                                          response ~ Manipulation + ReinDensMean.sc + initial.sc ~1 | Transect varIdent(form = ~1 | DistrictZone) 10 852.4388 59.4268877 2.044331e-14
MODEL SELECTED = mod4.ManipxInit_Excl.Init_Excl

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     MODEL SUMMARY                             
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Linear mixed-effects model fit by REML
  Data: tmp.data 
       AIC      BIC    logLik
  807.4806 845.5827 -392.7403

Random effects:
 Formula: ~1 | Transect
        (Intercept)  Residual
StdDev:   0.1414232 0.7350138

Variance function:
 Structure: Different standard deviations per stratum
 Formula: ~1 | DistrictZone 
 Parameter estimates:
     30A      30B      30C       16       17 
1.000000 2.978624 1.966913 1.168603 1.477129 
Fixed effects:  response ~ Manipulation + Habitat2 + ReinDensMean.sc + Manipulation:ReinDensMean.sc 
                                          Value  Std.Error  DF  t-value p-value
(Intercept)                            5.094148 0.12625745 232 40.34730  0.0000
ManipulationTreatment                  0.801021 0.13803441 232  5.80306  0.0000
Habitat2Exposed/Mountain              -1.228140 0.14994854 232 -8.19041  0.0000
ReinDensMean.sc                       -0.133668 0.05494848 232 -2.43261  0.0157
ManipulationTreatment:ReinDensMean.sc  0.185205 0.07450929 232  2.48566  0.0136
 Correlation: 
                                      (Intr) MnpltT Hb2E/M RnDnM.
ManipulationTreatment                 -0.506                     
Habitat2Exposed/Mountain              -0.416 -0.024              
ReinDensMean.sc                       -0.253  0.185  0.125       
ManipulationTreatment:ReinDensMean.sc  0.154 -0.294  0.012 -0.650

Standardized Within-Group Residuals:
        Min          Q1         Med          Q3         Max 
-4.07153637 -0.59814435  0.03923096  0.65108460  2.49917219 

Number of Observations: 241
Number of Groups: 5 


ANOVA TABLE
                             numDF denDF   F-value p-value
(Intercept)                      1   232 2922.6613  <.0001
Manipulation                     1   232   44.4602  <.0001
Habitat2                         1   232   66.5535  <.0001
ReinDensMean.sc                  1   232    1.1567  0.2833
Manipulation:ReinDensMean.sc     1   232    6.1785  0.0136


R-SQUARED
  Response   family     link method  Marginal Conditional
1 response gaussian identity   none 0.4855197   0.5038864


R-SQUARED NAIVE
[1] "0.242"
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     95% CI                                    
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   Response                         Type                             Parameter       lower       est.       upper
1   Biomass               Fixed effects:                           (Intercept)  4.84539007  5.0941478  5.34290552
2   Biomass               Fixed effects:                 ManipulationTreatment  0.52906020  0.8010214  1.07298258
3   Biomass               Fixed effects:              Habitat2Exposed/Mountain -1.52357494 -1.2281400 -0.93270513
4   Biomass               Fixed effects:                       ReinDensMean.sc -0.24192991 -0.1336681 -0.02540629
5   Biomass               Fixed effects: ManipulationTreatment:ReinDensMean.sc  0.03840357  0.1852049  0.33200622
6   Biomass              Random Effects:                              Transect  0.01951552  0.1414232  1.02485159
7   Biomass           Variance function:                                   30B  2.32269674  2.9786245  3.81978563
8   Biomass           Variance function:                                   30C  1.44169229  1.9669130  2.68347616
9   Biomass           Variance function:                                    16  0.84854596  1.1686030  1.60938011
10  Biomass           Variance function:                                    17  1.05532508  1.4771292  2.06752459
11  Biomass Within-group standard error:                                 sigma  0.61910082  0.7350138  0.87262895


