2026-10-14 https://api.researchdata.se/oai-pmh

oai:researchdata.se:2024-189/1 2025-06-26 subject:ssif:10408 subject:ssif:10616 subject:ssif:104 subject:ssif:106 subject:ssif:1 principal:slug:uppsala-university

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.57804/83hw-m374 Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance Data on Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance https://orcid.org/0000-0003-1911-027X Biochemistry Biokemi Molecular Biology Molekylärbiologi We present a comprehensive analysis of stop codon usage in bacteria by analyzing over eight million coding sequences of 4684 bacterial sequences. Using a newly developed program called "stop codon counter," the frequencies of the three classical stop codons TAA, TAG, and TGA were analyzed, and a publicly available stop codon database was built. Datafiles contain: 1) Complete data set of stop codon usage of all analyzed sequences as described in the publication "Comprehensive Analysis of Stop Codon Usage in Bacteria and Its Correlation with Release Factor Abundance" by Korkmaz et al (2014). 2) The Java program that was used for the analysis of the coding sequences. Execute the file in Program\ProjectStopCodonCounter\dist The dataset was originally published in DiVA and moved to SND in 2024. Se engelsk version av katalogposten för information om data. Datasetet har ursprungligen publicerats i DiVA och flyttades över till SND 2024. info:eu-repo/semantics/openAccess Uppsala University Uppsala universitet 2016-12-14T00:00:00Z eng