2026-10-14 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17044-scilifelab-13246817/0 2025-03-04 subject:ssif:3 subject:ssif:10611 subject:ssif:106 subject:ssif:1 principal:slug:swedish-university-of-agricultural-sciences

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17044/SCILIFELAB.13246817 Gold Stamp IDs to SRA IDs convertion of the metagenomes of GEMs Moritz Buck Medical and Health Sciences Medicin och hälsovetenskap Ecology Ekologi A small simple JSON-file containing the mapping from Gold Stamp IDs from the IMG/JGI database to the SRA IDs useable by fastq-dump to download the corresponding metagenomes from NCBI. The GoldIDs are the ones from the Supplemental Table 1 from Nayfach, S., Roux, S., Seshadri, R. et al. A genomic catalog of Earth’s microbiomes. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0718-6, that have been submited to the Short Read Archive. The code used to generate this mapping is available at https://github.com/moritzbuck/jgi2sra_mapper Swedish University of Agricultural Sciences Sveriges lantbruksuniversitet 2020-11-23T00:00:00Z