2026-10-14 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17044-scilifelab-15082398/0 2023-06-01 subject:ssif:3 subject:ssif:30203 subject:ssif:302 subject:ssif:10609 subject:ssif:106 subject:ssif:1 subject:ssif:304 subject:ssif:10616 principal:slug:royal-institute-of-technology

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17044/SCILIFELAB.15082398 Single Cell Smart-Seq 3 RNA-Seq and Bulk Exome Seq from Breast Cancer Patients https://orcid.org/0000-0001-8924-0075 Hosein Toosi Jeff Mold Camilla Engblom Xinsong Chen Ciara O’Flanagan Michael Hagemann-Jensen Rickard Sandberg Johan Hartman https://orcid.org/0000-0002-0487-9599 https://orcid.org/0000-0003-3422-8823 Jens Lagergren Medical and Health Sciences Medicin och hälsovetenskap Cancer and Oncology Cancer och onkologi Genetics and Genomics Genetik och genomik Medical Biotechnology Medicinsk bioteknologi Molecular Biology Molekylärbiologi Data Set Description Single cell RNA sequencing (Samrt-Seq3) and Whole exome sequencing from multiple regions of individual tumors from Breast Cancer patients and also single cell RNA seq for two ovarian cancer cell lines. The dataset contains raw sequencing data for various high-throughput molecular tests performed on two sample types: tumor samples from two breast cancer patients and cell lines derived from High-grade serous carcinoma Patients. The breast cancer data comes from two patients: patient 1 (BCSA1) has two tumor regions A-B and patient 2 (BCSA2) has five regions(A-E). For a normal sample and each region from each patient Whole Exome Sequencing was performed using Twist Biosciences Human Exome Kit by the SNP&SEQ Technology platform, SciLifeLab, National Genomics Infrastructure Uppsala, Sweden. Also for each patient, EPCAM+ CD45- sorted cells from all the regions where sorted to a 384 well plate, and Smart-Seq3 libraries were prepared at Karolinska Institutet and sequenced at National Genomics Infrastructure Uppsala, Sweden. The HGSOC cell-line data comes from OV2295R2 and TOV2295R cell lines described in Laks et al Cell 2019 Nov 14; 179(5): 1207–1221.e22 doi: 10.1016/j.cell.2019.10.026 . The cell line Smart-Seq3 libraries were prepared from two 384 well plates at Karolinska Institutet and sequenced at National Genomics Infrastructure Uppsala, Sweden. Terms for accessThis dataset is to be used for research on intratumor heterogeneity and subclonal evolution of tumors. To apply for conditional access to the dataset in this publication, please contact datacentre@scilifelab.se (mailto:datacentre@scilifelab.se) . info:eu-repo/semantics/restrictedAccess Royal Institute of Technology Kungliga Tekniska högskolan 2021-08-27T00:00:00Z