2026-10-14 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17044-scilifelab-16866202/0 2023-05-30 subject:ssif:3 subject:ssif:10203 subject:ssif:102 subject:ssif:1 principal:slug:stockholm-university

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17044/SCILIFELAB.16866202 Data and most relevant results for the FoldDock project https://orcid.org/0000-0003-3439-1866 Gabriele Pozzati Arne Elofsson Medical and Health Sciences Medicin och hälsovetenskap Bioinformatics (Computational Biology) Bioinformatik (beräkningsbiologi) Data and main results for the study "Improved prediction of protein-protein interactions using AlphaFold2 and extended multiple-sequence alignments." Contained datasets consist of:1 - 219 heterodimers from dockground benchmark 4 dataset 2 - 1503 heterodimeric structures from a recent study (Green, A. G. et al. Nat. Commun. 12, 1–12 (2021))3 - 7 heterodimeric complexes from CASP144 - 8 novel heterodimeric complexes deposited in the PDB database after 15 June 2021 For each one of the mentioned datasets it can be found in this repository:- concatenated protein sequences in FASTA format;- 3D structure atomic coordinates in PDB format; - csv files summarizing chain IDs, chain lengths and other dataset parameters;- msas for pair of sequences, required to run AlphaFold2 For dataset 1 and 2, AlphaFold2 output docking results for 5 identical runs are provided as well, together with a csv summarizing dockq scores and different model quality metrics. Stockholm University Stockholms universitet 2022-03-17T00:00:00Z