2026-10-12 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17044-scilifelab-24324382/0 2024-08-29 subject:ssif:3 subject:ssif:10611 subject:ssif:106 subject:ssif:1 principal:slug:stockholm-university

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17044/SCILIFELAB.24324382 Gene annotation of Linum trigynum https://orcid.org/0000-0002-2962-2669 Tanja Slotte Juanita Gutierrez-Valencia Panagiotis-Ioannis Zervakis Zoé Postel Ignas Bunikis Lucile Soler Aleksandra Losvik Aurelie Desamore https://orcid.org/0000-0003-4142-2579 Sara Mehrabi Benjamin Laenen Mohamed Abdelaziz Olga Vinnere Pettersson Juan Arroyo Medical and Health Sciences Medicin och hälsovetenskap Ecology Ekologi The file contains the genes annotation of Linum trigynum genome. The genome has been deposited to [ENA](https://www.ebi.ac.uk/ena/browser/home) with the accession id: GCA_964030455 (project PRJEB67577). The genes annotation has been done with [TSEBRA](https://github.com/Gaius-Augustus/TSEBRA). The genes contained in the S-locus region has been manually annotated using [StringTie](https://ccb.jhu.edu/software/stringtie/) and [TransDecoder](https://github.com/TransDecoder/). The conversion from gtf to gff3 has been done with [AGAT](https://agat.readthedocs.io/en/latest/index.html). It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087 https://creativecommons.org/licenses/by/4.0/ Stockholm University Stockholms universitet 2024-08-29T00:00:00Z