2026-10-14 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17044-scilifelab-25348405/0 2024-05-07 subject:ssif:3 subject:ssif:10609 subject:ssif:106 subject:ssif:1 principal:slug:karolinska-institutet

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17044/SCILIFELAB.25348405 MINUTE-ChIP example data https://orcid.org/0000-0001-5438-9654 https://orcid.org/0000-0001-8724-4849 Medical and Health Sciences Medicin och hälsovetenskap Genetics and Genomics Genetik och genomik This collection contains an example MINUTE-ChIP dataset to run minute pipeline on, provided as supporting material to help users understand the results of a MINUTE-ChIP experiment from raw data to a primary analysis that yields the relevant files for downstream analysis along with summarized QC indicators. Example primary non-demultiplexed FASTQ files provided here were used to generate GSM5493452-GSM5493463 (H3K27m3) and GSM5823907-GSM5823918 (Input), deposited on GEO with the minute pipeline all together under series GSE181241. For more information about MINUTE-ChIP, you can check the publication (https://www.nature.com/articles/s41556-022-00916-w) relevant to this dataset: Kumar, Banushree, et al. "Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation." Nature Cell Biology 24.6 (2022): 845-857. If you want more information about the minute pipeline, there is a public biorXiv (https://www.biorxiv.org/content/10.1101/2022.03.14.484318v1) and a GitHub repository (https://github.com/elsasserlab/minute) and official documentation (https://minute.readthedocs.io/en/latest/) . https://creativecommons.org/licenses/by-nc-nd/4.0/ Karolinska Institutet Karolinska Institutet 2024-05-07T00:00:00Z