2026-10-14 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17044-scilifelab-28869398/0 2025-05-15 subject:ssif:3 subject:ssif:403 subject:ssif:4 principal:slug:uppsala-university

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17044/SCILIFELAB.28869398 Data for 'An interactive web resource for exploring equine BAL cell scRNA-seq data' Julia Sulayeva Kim Fegraeus https://orcid.org/0000-0002-9766-1440 https://orcid.org/0000-0001-8699-9959 https://orcid.org/0000-0002-2775-6516 Medical and Health Sciences Medicin och hälsovetenskap Veterinary Science Veterinärmedicin This dataset contains the count matrices required to reproduce the web application for interactive visualization of single-cell RNA-seq (scRNA-seq) data from equine bronchoalveolar lavage (BAL) cells. The Shiny app is available at: https://equbal-explorer.serve.scilifelab.se/app/equbal-explorer hosted by SciLifeLab serve. The web application can be recreated using the scripts provided in the associated GitHub repository: https://github.com/Molmed/EquBAL_explorer. The scRNA-seq data were generated from 21 clinical equine asthma cases and 8 healthy controls using the HIVE and Drop-seq platforms. Details of the laboratory procedures and the generation of the count matrices are described in the original publications: https://doi.org/10.1038/s41598-023-43368-4 and https://doi.org/10.1371/journal.pone.0317343. Raw sequencing data is available at SRA as described in these papers. A phenotype file is also provided, containing BAL cytology and other phenotypic information for the samples included in the web application. https://creativecommons.org/licenses/by/4.0/ Uppsala University Uppsala universitet 2025-05-15T00:00:00Z