2026-10-11 https://api.researchdata.se/oai-pmh

oai:researchdata.se:doi-10-17045-sthlmuni-10318610/0 2019-11-19 subject:ssif:30108 subject:ssif:301 subject:ssif:3 subject:ssif:30105 principal:slug:stockholm-university

info:eu-repo/semantics/other http://purl.org/dc/dcmitype/Dataset https://doi.org/10.17045/STHLMUNI.10318610 pciSeq files in csv format https://orcid.org/0000-0001-7509-8071 Kenneth Harris Thomas Hauling Dimitris Nicoloutsopoulos Ana B. Munoz-Manchado Nathan Skene Jens Hjerling-Leffler Mats Nilsson Cell and Molecular Biology Cell- och molekylärbiologi Neurosciences Neurovetenskaper This figshare data set contains more easily accessible format of files included in figshare dataset https://doi.org/10.6084/m9.figshare.7150760 In situ sequencing (ISS) is a technology to sequence RNA directly inside tissue sections, and probabilistic cell typing by ISS (pciSeq) method is a method to spatially map single-cell RNA-sequencing defined cell types. (See Associated Publication) * spots_whole_section files have three columns: genes, X and Y position * mask files contain polygon coordinates of CA1 regions * cells files have cell ID, X and Y position of cells in CA1, and sum of probabilities of all assigned reads. * spots_w_segmentation files contain spot assignment results from pciSeq algorithm. * celltype files contain cell type assignment results from pciSeq algorithm. https://creativecommons.org/licenses/by/4.0/ Stockholm University Stockholms universitet 2019-11-18T00:00:00Z